GitHub

This project aims to perform multiple sequence alignment for given k protein amino acid sequences.

The main goal of the project is to perform multiple sequence alignment for a certain number of protein amino acid sequences. This process is carried out using the given BLOSUM62 matrix and a gap ...
GitHub

skeleton_script_baseline_model.py

Baseline impact predictor of SNPs in VEP format. Uses raw BLOSUM62 matrix from a text file for scoring. parser.add_argument('vep', help='a path to the VEP input file') parser.add_argument('blosum', ...
Scientific Research Publishing

S. R. Eddy, “Where Did the BLOSUM62 Alignment Score Matrix Come From?” Nature Biotechnology, Vol. 22, No. 8, 2004, pp. 1035-1036. doi:10.1038/nbt0804-1035

ABSTRACT: Maltase-glucoamylase (MGAM) and sucrase-isomaltase (SI) belong to human intestinal alpha-glucosidase and their N-terminal side catalytic domains are called NtMGAM and NtSI, and their ...
IEEE

Phosphorylation Site Prediction with A Modified k-Nearest Neighbor Algorithm and BLOSUM62 Matrix

Abstract: Phosphorylation is one of the most important post-translational modifications for eukaryotic proteins. Experimental identification of protein kinases' (PKs) substrates with their ...