PalmDoc Book (PDB) files are container files used to hold structured digital text files in a format that can include graphics with the text. Many older released texts are contained in the PDB format, ...

Convert between PDB, SDF, MOL2, SMILES, and 100+ other formats. Unlock the full potential of your PDB structures with our all-in-one online PDB file converter. Whether you need simplified SMILES, ...

Convert between PDB, SDF, MOL2, SMILES, and 100+ other formats. Transform 3D structural data from PDB files into concise, machine-readable SMILES strings—right in your browser. Our free online PDB to ...

I am trying to use OpenMM to perform QM/MM calculations, typically for protein-ligand interaction systems. The PDB files I read are either downloaded from databases or obtained by adding hydrogens ...