Suffix arrays serve as a fundamental tool in string processing by indexing all suffixes of a text in lexicographical order, thereby facilitating fast pattern searches, text retrieval, and genome ...

This repo contains two crates, one to speed up binary search in sorted integer arrays, and one to speed up suffix array searching. For now, this is a research project. Code is not directly intended to ...

This repo contains two crates, one to speed up binary search in sorted integer arrays, and one to speed up suffix array searching. For now, this is a research project. Code is not directly intended to ...

Abstract: Path indexes based on suffix trees have shown to be highly efficient structures when dealing with digital collection that consists of structured documents, since they provide a fast response ...

Abstract: Although the classical B-tree and its derivatives are space efficient data structures for small string documents, they require many structures and an excessive amount of pointer ...

High-throughput RNA sequencing enables quantification of transcripts (both known and novel), exon/exon junctions and fusions of exons from different genes. Discovery of gene fusions-particularly those ...

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