This automates JACoP over a directory with images and corresponding ROI sets and creates a single CSV with colocalization data for each ROI. It does not generate the ROIs. Look at the Tutorial PDF for ...

A major part of histologic studies is the use of high resolution imaging for data collection and analysis. ImageJ, a freely available software from the NIH designed for image analysis, has many ...

Thanks for the fantastic work! I used cellpose v2.2.2 to run cell segmentation on my images and exported PNG labeled masks and ImageJ-compatible ROI zip files. After loading PNG and ROIs in ImageJ ...

Cell biology heavily relies on the behavior of fibrillar structures, such as the cytoskeleton, yet the analysis of their behavior in tissues often remains qualitative. Image analysis tools have been ...