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7:38
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Sanbomics
Sequence alignment in Python, and with no intermediate files
Here I show you how to align sequences in Python all while using STDOUT and STDIN so no files need to be written and everything is done in RAM. I use mafft as the aligner, but I supply the sequences as a python object and read the alignment as a python object. I show global alignment, but the same principles can be used with other aligners and ...
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